R toolkit for single cell genomics
R's data.table package extends data.frame:
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
R for data science: a book
An implementation of the Grammar of Graphics in R
📊 A universal enrichment tool for interpreting omics data
Inferring CNV from Single-Cell RNA-Seq
Produce PRISMA-2020 compliant flow diagrams
A curated list of awesome R packages, frameworks and software.
dplyr: A grammar of data manipulation
Accurate sample inference from amplicon data with single nucleotide resolution
Tree-sitter grammar for R
Simple Features for R
R package for detecting doublets in single-cell RNA sequencing data
renv: Project environments for R.
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Fast, sensitive and accurate integration of single-cell data with Harmony
