R toolkit for single cell genomics
A curated list of awesome R packages, frameworks and software.
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Inferring CNV from Single-Cell RNA-Seq
R package for detecting doublets in single-cell RNA sequencing data
📊 A universal enrichment tool for interpreting omics data
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
R toolkit for the analysis of single-cell chromatin data
NicheNet: predict active ligand-target links between interacting cells
Easy interactive web applications with R
Interfaces for HDF5-based Single Cell File Formats
renv: Project environments for R.
A Wes Anderson color palette for R
A curated list of awesome network analysis resources.
Fast, sensitive and accurate integration of single-cell data with Harmony
An implementation of the Language Server Protocol for R
Accurate sample inference from amplicon data with single nucleotide resolution
An implementation of the Grammar of Graphics in R
Make Complex Heatmaps
Simple Features for R
