R toolkit for single cell genomics
R toolkit for the analysis of single-cell chromatin data
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
R package for detecting doublets in single-cell RNA sequencing data
Community-provided extensions to Seurat
renv: Project environments for R.
Accurate sample inference from amplicon data with single nucleotide resolution
R's data.table package extends data.frame:
Fast, sensitive and accurate integration of single-cell data with Harmony
Inferring CNV from Single-Cell RNA-Seq
An implementation of the Grammar of Graphics in R
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
CmdStanR: the R interface to CmdStan
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
Interfaces for HDF5-based Single Cell File Formats
A Wes Anderson color palette for R
Easy interactive web applications with R
